Detailed information of SNP:
|
SNP ID:
sf0123799925(Gbrowse)
Chromosome: chr01 Position: 23799925 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 71.75% | 28.25% |
| All Indica | 784 | 93.62% | 6.38% |
| All Japonica | 496 | 32.46% | 67.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 200 | 82.00% | 18.00% |
| Temperate Japonica | 335 | 25.07% | 74.93% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123799925 | A->G | INTERGENIC | None |