Detailed information of SNP:
|
SNP ID:
sf0123806560(Gbrowse)
Chromosome: chr01 Position: 23806560 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 75.69% | 24.31% |
| All Indica | 796 | 61.56% | 38.44% |
| All Japonica | 491 | 97.35% | 2.65% |
| Aus | 42 | 90.48% | 9.52% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 212 | 21.23% | 78.77% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 88.64% | 11.36% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123806560 | T->G | LOC_Os01g41980(LOC_Os01g41980.1) | INTRON |