Detailed information of SNP:
|
SNP ID:
sf0123814768(Gbrowse)
Chromosome: chr01 Position: 23814768 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 90.17% | 9.83% |
| All Indica | 798 | 86.97% | 13.03% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123814768 | T->C | LOC_Os01g42010(LOC_Os01g42010.1) | INTRON |
| sf0123814768 | T->C | LOC_Os01g42010(LOC_Os01g42010.2) | INTRON |