Detailed information of SNP:
|
SNP ID:
sf0123837290(Gbrowse)
Chromosome: chr01 Position: 23837290 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.22% | 31.78% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123837290 | A->G | INTERGENIC | None |