Detailed information of SNP:
|
SNP ID:
sf0123838143(Gbrowse)
Chromosome: chr01 Position: 23838143 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 56.18% | 43.82% |
| All Indica | 796 | 42.09% | 57.91% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 22.25% | 77.75% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123838143 | T->C | LOC_Os01g42030(LOC_Os01g42030.1) | Non-Synonymous SNP |