Detailed information of SNP:
|
SNP ID:
sf0123861739(Gbrowse)
Chromosome: chr01 Position: 23861739 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 88.56% | 11.44% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 459 | 71.24% | 28.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 304 | 63.16% | 36.84% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123861739 | G->T | INTERGENIC | None |