Detailed information of SNP:
SNP ID:
sf0123861739(Gbrowse)
Chromosome: chr01 Position: 23861739 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1381 | 88.56% | 11.44% |
All Indica | 799 | 97.00% | 3.00% |
All Japonica | 459 | 71.24% | 28.76% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 211 | 95.26% | 4.74% |
Temperate Japonica | 304 | 63.16% | 36.84% |
Tropical Japonica | 91 | 81.32% | 18.68% |
Japonica Intermediate | 64 | 95.31% | 4.69% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0123861739 | G->T | INTERGENIC | None |