Detailed information of SNP:
|
SNP ID:
sf0123862489(Gbrowse)
Chromosome: chr01 Position: 23862489 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 94.92% | 5.08% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 458 | 87.34% | 12.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 304 | 87.83% | 12.17% |
| Tropical Japonica | 90 | 80.00% | 20.00% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123862489 | G->A | INTERGENIC | None |