Detailed information of SNP:
|
SNP ID:
sf0123890406(Gbrowse)
Chromosome: chr01 Position: 23890406 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.29% | 11.71% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 496 | 86.09% | 13.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123890406 | C->T | INTERGENIC | None |