Detailed information of SNP:
|
SNP ID:
sf0123891465(Gbrowse)
Chromosome: chr01 Position: 23891465 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 56.81% | 43.19% |
| All Indica | 788 | 42.64% | 57.36% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 374 | 22.73% | 77.27% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 203 | 34.98% | 65.02% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123891465 | C->T | INTERGENIC | None |