Detailed information of SNP:
|
SNP ID:
sf0123891921(Gbrowse)
Chromosome: chr01 Position: 23891921 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 87.38% | 12.62% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 496 | 86.09% | 13.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123891921 | C->T | INTERGENIC | None |