Detailed information of SNP:
|
SNP ID:
sf0123918191(Gbrowse)
Chromosome: chr01 Position: 23918191 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1349 | 94.29% | 5.71% |
| All Indica | 729 | 89.99% | 10.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 317 | 82.97% | 17.03% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123918191 | A->G | INTERGENIC | None |