Detailed information of SNP:
|
SNP ID:
sf0123926128(Gbrowse)
Chromosome: chr01 Position: 23926128 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 72.37% | 27.63% |
| All Indica | 778 | 60.67% | 39.33% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 24 | 25.00% | 75.00% |
| Indica I | 372 | 34.14% | 65.86% |
| Indica II | 202 | 91.58% | 8.42% |
| Indica Intermediate | 204 | 78.43% | 21.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123926128 | G->A | LOC_Os01g42234(LOC_Os01g42234.1) | INTRON |