Detailed information of SNP:
|
SNP ID:
sf0123949598(Gbrowse)
Chromosome: chr01 Position: 23949598 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 95.11% | 4.89% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 450 | 86.67% | 13.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 303 | 84.49% | 15.51% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 60 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123949598 | A->G | INTERGENIC | None |