Detailed information of SNP:
|
SNP ID:
sf0123990781(Gbrowse)
Chromosome: chr01 Position: 23990781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 95.34% | 4.66% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 473 | 89.43% | 10.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 88.54% | 11.46% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123990781 | C->T | INTERGENIC | None |