Detailed information of SNP:
|
SNP ID:
sf0124001660(Gbrowse)
Chromosome: chr01 Position: 24001660 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.83% | 24.17% |
| All Indica | 799 | 59.20% | 40.80% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 32.00% | 68.00% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124001660 | C->T | LOC_Os01g42310(LOC_Os01g42310.1) | INTRON |