Detailed information of SNP:
|
SNP ID:
sf0124030168(Gbrowse)
Chromosome: chr01 Position: 24030168 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 83.16% | 16.84% |
| All Indica | 799 | 74.59% | 25.41% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124030168 | A->C | INTERGENIC | None |