Detailed information of SNP:
|
SNP ID:
sf0124035128(Gbrowse)
Chromosome: chr01 Position: 24035128 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 66.40% | 33.60% |
| All Indica | 795 | 54.84% | 45.16% |
| All Japonica | 475 | 94.11% | 5.89% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 23.26% | 76.74% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 74 | 79.73% | 20.27% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124035128 | T->G | INTERGENIC | None |