Detailed information of SNP:
|
SNP ID:
sf0124057944(Gbrowse)
Chromosome: chr01 Position: 24057944 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.04% | 41.96% |
| All Indica | 798 | 43.36% | 56.64% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 42.13% | 57.87% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 52.86% | 47.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124057944 | T->C | INTERGENIC | None |