Detailed information of SNP:
|
SNP ID:
sf0124059110(Gbrowse)
Chromosome: chr01 Position: 24059110 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 52.55% | 47.45% |
| All Indica | 796 | 36.31% | 63.69% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 31.28% | 68.72% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124059110 | G->A | INTERGENIC | None |