Detailed information of SNP:
|
SNP ID:
sf0124059213(Gbrowse)
Chromosome: chr01 Position: 24059213 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1338 | 58.82% | 41.18% |
| All Indica | 734 | 44.41% | 55.59% |
| All Japonica | 490 | 86.73% | 13.27% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 342 | 39.47% | 60.53% |
| Indica II | 188 | 44.68% | 55.32% |
| Indica Intermediate | 204 | 52.45% | 47.55% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 39.13% | 60.87% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124059213 | G->A | INTERGENIC | None |