Detailed information of SNP:
|
SNP ID:
sf0124113421(Gbrowse)
Chromosome: chr01 Position: 24113421 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.27% | 26.73% |
| All Indica | 798 | 61.28% | 38.72% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 67.38% | 32.62% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124113421 | G->A | LOC_Os01g42410(LOC_Os01g42410.1) | INTRON |