Detailed information of SNP:
|
SNP ID:
sf0124114806(Gbrowse)
Chromosome: chr01 Position: 24114806 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1288 | 64.36% | 35.64% |
| All Indica | 741 | 93.93% | 6.07% |
| All Japonica | 488 | 22.34% | 77.66% |
| Aus | 13 | 46.15% | 53.85% |
| Indica I | 343 | 95.04% | 4.96% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 190 | 91.05% | 8.95% |
| Temperate Japonica | 333 | 12.91% | 87.09% |
| Tropical Japonica | 87 | 62.07% | 37.93% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 32 | 53.12% | 46.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124114806 | A->G | INTERGENIC | None |