Detailed information of SNP:
|
SNP ID:
sf0124140368(Gbrowse)
Chromosome: chr01 Position: 24140368 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.06% | 22.94% |
| All Indica | 798 | 65.04% | 34.96% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 68.98% | 31.02% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124140368 | T->G | LOC_Os01g42460(LOC_Os01g42460.1) | INTRON |