Detailed information of SNP:
|
SNP ID:
sf0124172819(Gbrowse)
Chromosome: chr01 Position: 24172819 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 62.27% | 37.73% |
| All Indica | 790 | 38.86% | 61.14% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 48.25% | 51.75% |
| Indica II | 210 | 19.05% | 80.95% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124172819 | A->G | INTERGENIC | None |