Detailed information of SNP:
|
SNP ID:
sf0124175020(Gbrowse)
Chromosome: chr01 Position: 24175020 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.37% | 42.63% |
| All Indica | 798 | 31.58% | 68.42% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 39.73% | 60.27% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124175020 | G->A | INTERGENIC | None |