Detailed information of SNP:
|
SNP ID:
sf0124204731(Gbrowse)
Chromosome: chr01 Position: 24204731 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 90.78% | 9.22% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 467 | 74.52% | 25.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 76.53% | 23.47% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 63 | 79.37% | 20.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124204731 | T->C | INTERGENIC | None |