Detailed information of SNP:
|
SNP ID:
sf0124211724(Gbrowse)
Chromosome: chr01 Position: 24211724 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 51.34% | 48.66% |
| All Indica | 794 | 15.99% | 84.01% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 15.32% | 84.68% |
| Indica II | 211 | 10.90% | 89.10% |
| Indica Intermediate | 211 | 22.27% | 77.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124211724 | G->A | LOC_Os01g42590(LOC_Os01g42590.1) | Non-Synonymous SNP |