Detailed information of SNP:
|
SNP ID:
sf0124232986(Gbrowse)
Chromosome: chr01 Position: 24232986 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.39% | 12.61% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124232986 | T->C | INTERGENIC | None |