Detailed information of SNP:
|
SNP ID:
sf0124233006(Gbrowse)
Chromosome: chr01 Position: 24233006 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 90.67% | 9.33% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 495 | 96.36% | 3.64% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124233006 | C->T | INTERGENIC | None |