Detailed information of SNP:
|
SNP ID:
sf0124265365(Gbrowse)
Chromosome: chr01 Position: 24265365 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 73.36% | 26.64% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 466 | 23.61% | 76.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 314 | 15.29% | 84.71% |
| Tropical Japonica | 90 | 63.33% | 36.67% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124265365 | T->C | LOC_Os01g42660(LOC_Os01g42660.1) | Synonymous |