Detailed information of SNP:
|
SNP ID:
sf0124266807(Gbrowse)
Chromosome: chr01 Position: 24266807 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 94.86% | 5.14% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 443 | 87.13% | 12.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 300 | 82.33% | 17.67% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 52 | 94.23% | 5.77% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124266807 | C->A | INTERGENIC | None |