Detailed information of SNP:
|
SNP ID:
sf0124290470(Gbrowse)
Chromosome: chr01 Position: 24290470 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.90% | 14.10% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124290470 | A->G | INTERGENIC | None |