Detailed information of SNP:
|
SNP ID:
sf0124306601(Gbrowse)
Chromosome: chr01 Position: 24306601 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 51.72% | 48.28% |
| All Indica | 716 | 92.88% | 7.12% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 333 | 93.99% | 6.01% |
| Indica II | 201 | 97.51% | 2.49% |
| Indica Intermediate | 182 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124306601 | A->G | INTERGENIC | None |