Detailed information of SNP:
|
SNP ID:
sf0124309734(Gbrowse)
Chromosome: chr01 Position: 24309734 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.28% | 41.72% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124309734 | T->A | INTERGENIC | None |