Detailed information of SNP:
|
SNP ID:
sf0124338243(Gbrowse)
Chromosome: chr01 Position: 24338243 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 91.79% | 8.21% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 481 | 92.93% | 7.07% |
| Aus | 65 | 6.15% | 93.85% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 57.50% | 42.50% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124338243 | G->A | INTERGENIC | None |