Detailed information of SNP:
|
SNP ID:
sf0124365521(Gbrowse)
Chromosome: chr01 Position: 24365521 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.23% | 32.77% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 12.35% | 87.65% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124365521 | A->T | LOC_Os01g42810(LOC_Os01g42810.1) | INTRON |