Detailed information of SNP:
|
SNP ID:
sf0124379137(Gbrowse)
Chromosome: chr01 Position: 24379137 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 89.35% | 10.65% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124379137 | A->G | LOC_Os01g42840(LOC_Os01g42840.1) | Non-Synonymous SNP |