Detailed information of SNP:
|
SNP ID:
sf0124388599(Gbrowse)
Chromosome: chr01 Position: 24388599 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1301 | 79.17% | 20.83% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 392 | 59.69% | 40.31% |
| Aus | 59 | 5.08% | 94.92% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 250 | 76.80% | 23.20% |
| Tropical Japonica | 89 | 13.48% | 86.52% |
| Japonica Intermediate | 53 | 56.60% | 43.40% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124388599 | A->G | INTERGENIC | None |