Detailed information of SNP:
|
SNP ID:
sf0124402508(Gbrowse)
Chromosome: chr01 Position: 24402508 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 82.89% | 17.11% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 398 | 48.24% | 51.76% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 260 | 36.54% | 63.46% |
| Tropical Japonica | 88 | 72.73% | 27.27% |
| Japonica Intermediate | 50 | 66.00% | 34.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124402508 | A->T | INTERGENIC | None |