Detailed information of SNP:
|
SNP ID:
sf0124404297(Gbrowse)
Chromosome: chr01 Position: 24404297 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 81.34% | 18.66% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 494 | 64.37% | 35.63% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 332 | 60.54% | 39.46% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124404297 | G->A | INTERGENIC | None |