Detailed information of SNP:
|
SNP ID:
sf0124419317(Gbrowse)
Chromosome: chr01 Position: 24419317 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 67.54% | 32.46% |
| All Indica | 787 | 95.68% | 4.32% |
| All Japonica | 464 | 17.46% | 82.54% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 368 | 98.37% | 1.63% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 308 | 1.30% | 98.70% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 63 | 28.57% | 71.43% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124419317 | T->C | INTERGENIC | None |