Detailed information of SNP:
|
SNP ID:
sf0124419435(Gbrowse)
Chromosome: chr01 Position: 24419435 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 92.82% | 7.18% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 481 | 93.97% | 6.03% |
| Aus | 64 | 7.81% | 92.19% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 84 | 80.95% | 19.05% |
| Japonica Intermediate | 63 | 82.54% | 17.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124419435 | C->T | INTERGENIC | None |