Detailed information of SNP:
|
SNP ID:
sf0124421013(Gbrowse)
Chromosome: chr01 Position: 24421013 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 65.69% | 34.31% |
| All Indica | 788 | 94.67% | 5.33% |
| All Japonica | 496 | 16.94% | 83.06% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 367 | 94.55% | 5.45% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124421013 | T->C | LOC_Os01g42920(LOC_Os01g42920.1) | Non-Synonymous SNP |