Detailed information of SNP:
|
SNP ID:
sf0124440870(Gbrowse)
Chromosome: chr01 Position: 24440870 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 17.10% | 82.90% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124440870 | A->G | INTERGENIC | None |