Detailed information of SNP:
|
SNP ID:
sf0124457405(Gbrowse)
Chromosome: chr01 Position: 24457405 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1290 | 86.90% | 13.10% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 372 | 77.42% | 22.58% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 228 | 70.61% | 29.39% |
| Tropical Japonica | 89 | 87.64% | 12.36% |
| Japonica Intermediate | 55 | 89.09% | 10.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124457405 | C->T | INTERGENIC | None |