Detailed information of SNP:
|
SNP ID:
sf0124464585(Gbrowse)
Chromosome: chr01 Position: 24464585 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 60.51% | 39.49% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 487 | 8.01% | 91.99% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 327 | 1.53% | 98.47% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124464585 | C->T | INTERGENIC | None |