Detailed information of SNP:
|
SNP ID:
sf0124470010(Gbrowse)
Chromosome: chr01 Position: 24470010 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 97.01% | 2.99% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 418 | 90.67% | 9.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 265 | 95.85% | 4.15% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 60 | 66.67% | 33.33% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124470010 | C->T | INTERGENIC | None |