Detailed information of SNP:
|
SNP ID:
sf0124522781(Gbrowse)
Chromosome: chr01 Position: 24522781 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 98.06% | 1.94% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 418 | 94.74% | 5.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 92.70% | 7.30% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 53 | 96.23% | 3.77% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124522781 | A->T | INTERGENIC | None |