Detailed information of SNP:
|
SNP ID:
sf0124589814(Gbrowse)
Chromosome: chr01 Position: 24589814 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 64.78% | 35.22% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 496 | 9.27% | 90.73% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124589814 | C->T | INTERGENIC | None |