Detailed information of SNP:
|
SNP ID:
sf0124658357(Gbrowse)
Chromosome: chr01 Position: 24658357 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.87% | 34.13% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 495 | 8.69% | 91.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0124658357 | G->A | INTERGENIC | None |